-
Galaxy Tutorial | Quality Control with FastQC - Episode 1
This tutorial shows you how to perform quality control with fastqc on the galaxy bioinformatics platform
Consultation(Video Conferencing): https://calendly.com/bioinformaticscoach
Teaching(Video Conferencing): https://calendly.com/bioinformaticscoach
Consultation(Audio Call): https://clarity.fm/vincentappiah
Get more bioinformatics tutorials on Patreon: https://www.patreon.com/bigdataanalytics
Support my work
https://www.buymeacoffee.com/informatician
https://www.paypal.com/paypalme/theinformatician
https://www.patreon.com/bigdataanalytics
Subscribe to my channels
Bioinformatics: https://www.youtube.com/channel/UCOJM9xzqDc6-43j2x_vXqCQ
Data Science: https://www.youtube.com/channel/UC3bjbWYK7S_FLW0y0Ux4tyQ
Short Clips: https://www.youtube.com/channel/UCrJE3zmKNd...
published: 21 Nov 2022
-
Adding Dockstore workflows to vgp.usegalaxy.org
A quick demo of adding assembly workflows to a Galaxy instance using TRS IDs
published: 21 Sep 2023
-
Download SRA / NCBI on USE.GALAXY.ORG
Download SRA / NCBI on USE.GALAXY.ORG
published: 22 May 2019
-
Galaxy Tutorial| How to use Galaxy to build Bioinformatics Workflows (An Overview)
Building Galaxy Worflows for Bioinformatics
Dataset:https://www.ebi.ac.uk/ena/browser/view/ERR3335404
Galaxy:
https://usegalaxy.org
https://usegalaxy.eu/
Thank me with a Coffee
https://www.buymeacoffee.com/informatician
Support My Work
https://www.patreon.com/bigdataanalytics
https://www.buymeacoffee.com/informatician
Get more bioinformatics tutorials on Patreon: https://www.patreon.com/bigdataanalytics
Teaching(Video Conferencing): https://calendly.com/bioinformaticscoach
Consultation(Video Conferencing): https://calendly.com/bioinformaticscoach
Consultation(Audio Call): https://clarity.fm/vincentappiah
Subscribe to my channels
Bioinformatics: https://www.youtube.com/channel/UCOJM9xzqDc6-43j2x_vXqCQ
Data Science: https://www.youtube.com/channel/UC3bjbWY...
published: 28 Jul 2023
-
Galaxy servers for whole genome sequence analysis | Recommendation
This is to recommend you the "Galaxy" project, a web-based platform for data-intensive biomedical research. Also, it has a training resource to improve your whole genome sequence analysis skills!
Link to the Galaxy server: https://usegalaxy.org/
Link to the Training resource: https://training.galaxyproject.org/
Thumbnail image credit: https://www.pexels.com/de-de/foto/schwarze-bewirtschaftete-brille-vor-laptop-computer-577585/
published: 28 Jul 2021
-
Bioinformatics - Setting Up UseGalaxy Locally! (Timestamps)
Hello Everyone!
This week I thought I would talk about UseGalaxy.org which has been a tool I had used in the past. The Galaxy project is a great initiative to get the complicated informatics tools in a much more easy-to-use format.
I had the wonderful opportunity of talking with one of the authors of the publication and will link it down below. If you use this platform, remember to not only reference the particular tool developers, but also reference the Galaxy Project's manuscript so they get credit for putting this great platform together.
UseGalaxy.org
Galaxy Project Installation Page:
https://galaxyproject.org/admin/get-galaxy/
The Galaxy manuscript:
https://academic.oup.com/nar/article/46/W1/W537/5001157
Timestamps:
00:23 - What is UseGalaxy?
02:17 - Why would you want to run Us...
published: 25 Jan 2021
-
galaxy tutorial genome mapping with bwa | paired end reads
bwa index
bwa mem
Subscribe to my channels
Bioinformatics: https://www.youtube.com/channel/UCOJM9xzqDc6-43j2x_vXqCQ
Data Science: https://www.youtube.com/channel/UC3bjbWYK7S_FLW0y0Ux4tyQ
Short Clips: https://www.youtube.com/channel/UCrJE3zmKNdkmPsh_6TIPIIg
Support my work
https://www.buymeacoffee.com/informatician
https://paypal.me/theinformatician
Support me on Patreon
https://www.patreon.com/bigdataanalytics
Book a Session
https://clarity.fm/vincentappiah
Reach out
bioinformaticscoach@gmail.com
published: 17 Nov 2022
-
تجربه اصوات اورج جالاكسي G2 محمد عبد السلام
published: 24 Sep 2022
-
Webinar: Use Galaxy on the web, the cloud, and your laptop too
Webinar: Use Galaxy on the web, the cloud, and your laptop too: Options for using Galaxy, everywhere and right now
Date: December 9th 2020
Presenters: Enis Afgan, Anton Nekrutenko, Michael Schatz
https://galaxyproject.org/events/2020-12-webinar-where/
published: 09 Dec 2020
-
Aziz galaxy org
J'aime+abonné
published: 16 Oct 2019
6:58
Galaxy Tutorial | Quality Control with FastQC - Episode 1
This tutorial shows you how to perform quality control with fastqc on the galaxy bioinformatics platform
Consultation(Video Conferencing): https://calendly.com...
This tutorial shows you how to perform quality control with fastqc on the galaxy bioinformatics platform
Consultation(Video Conferencing): https://calendly.com/bioinformaticscoach
Teaching(Video Conferencing): https://calendly.com/bioinformaticscoach
Consultation(Audio Call): https://clarity.fm/vincentappiah
Get more bioinformatics tutorials on Patreon: https://www.patreon.com/bigdataanalytics
Support my work
https://www.buymeacoffee.com/informatician
https://www.paypal.com/paypalme/theinformatician
https://www.patreon.com/bigdataanalytics
Subscribe to my channels
Bioinformatics: https://www.youtube.com/channel/UCOJM9xzqDc6-43j2x_vXqCQ
Data Science: https://www.youtube.com/channel/UC3bjbWYK7S_FLW0y0Ux4tyQ
Short Clips: https://www.youtube.com/channel/UCrJE3zmKNdkmPsh_6TIPIIg
Reach out
bioinformaticscoach@gmail.com
bioinformatics for beginners
bioinformatics tutorial
bioinformatics course
Bioinformatics Project
#bioinformaticsforbeginners #bioinformatics #bioinformática #linuxforbeginners #linux
https://wn.com/Galaxy_Tutorial_|_Quality_Control_With_Fastqc_Episode_1
This tutorial shows you how to perform quality control with fastqc on the galaxy bioinformatics platform
Consultation(Video Conferencing): https://calendly.com/bioinformaticscoach
Teaching(Video Conferencing): https://calendly.com/bioinformaticscoach
Consultation(Audio Call): https://clarity.fm/vincentappiah
Get more bioinformatics tutorials on Patreon: https://www.patreon.com/bigdataanalytics
Support my work
https://www.buymeacoffee.com/informatician
https://www.paypal.com/paypalme/theinformatician
https://www.patreon.com/bigdataanalytics
Subscribe to my channels
Bioinformatics: https://www.youtube.com/channel/UCOJM9xzqDc6-43j2x_vXqCQ
Data Science: https://www.youtube.com/channel/UC3bjbWYK7S_FLW0y0Ux4tyQ
Short Clips: https://www.youtube.com/channel/UCrJE3zmKNdkmPsh_6TIPIIg
Reach out
bioinformaticscoach@gmail.com
bioinformatics for beginners
bioinformatics tutorial
bioinformatics course
Bioinformatics Project
#bioinformaticsforbeginners #bioinformatics #bioinformática #linuxforbeginners #linux
- published: 21 Nov 2022
- views: 2528
0:29
Adding Dockstore workflows to vgp.usegalaxy.org
A quick demo of adding assembly workflows to a Galaxy instance using TRS IDs
A quick demo of adding assembly workflows to a Galaxy instance using TRS IDs
https://wn.com/Adding_Dockstore_Workflows_To_Vgp.Usegalaxy.Org
A quick demo of adding assembly workflows to a Galaxy instance using TRS IDs
- published: 21 Sep 2023
- views: 47
8:43
Galaxy Tutorial| How to use Galaxy to build Bioinformatics Workflows (An Overview)
Building Galaxy Worflows for Bioinformatics
Dataset:https://www.ebi.ac.uk/ena/browser/view/ERR3335404
Galaxy:
https://usegalaxy.org
https://usegalaxy.e...
Building Galaxy Worflows for Bioinformatics
Dataset:https://www.ebi.ac.uk/ena/browser/view/ERR3335404
Galaxy:
https://usegalaxy.org
https://usegalaxy.eu/
Thank me with a Coffee
https://www.buymeacoffee.com/informatician
Support My Work
https://www.patreon.com/bigdataanalytics
https://www.buymeacoffee.com/informatician
Get more bioinformatics tutorials on Patreon: https://www.patreon.com/bigdataanalytics
Teaching(Video Conferencing): https://calendly.com/bioinformaticscoach
Consultation(Video Conferencing): https://calendly.com/bioinformaticscoach
Consultation(Audio Call): https://clarity.fm/vincentappiah
Subscribe to my channels
Bioinformatics: https://www.youtube.com/channel/UCOJM9xzqDc6-43j2x_vXqCQ
Data Science: https://www.youtube.com/channel/UC3bjbWYK7S_FLW0y0Ux4tyQ
Short Clips: https://www.youtube.com/channel/UCrJE3zmKNdkmPsh_6TIPIIg
Reach out
bioinformaticscoach@gmail.com
bioinformatics for beginners
bioinformatics tutorial
bioinformatics course
Bioinformatics Project
#bioinformaticsforbeginners #bioinformatics #bioinformática #linuxforbeginners #linux
https://wn.com/Galaxy_Tutorial|_How_To_Use_Galaxy_To_Build_Bioinformatics_Workflows_(An_Overview)
Building Galaxy Worflows for Bioinformatics
Dataset:https://www.ebi.ac.uk/ena/browser/view/ERR3335404
Galaxy:
https://usegalaxy.org
https://usegalaxy.eu/
Thank me with a Coffee
https://www.buymeacoffee.com/informatician
Support My Work
https://www.patreon.com/bigdataanalytics
https://www.buymeacoffee.com/informatician
Get more bioinformatics tutorials on Patreon: https://www.patreon.com/bigdataanalytics
Teaching(Video Conferencing): https://calendly.com/bioinformaticscoach
Consultation(Video Conferencing): https://calendly.com/bioinformaticscoach
Consultation(Audio Call): https://clarity.fm/vincentappiah
Subscribe to my channels
Bioinformatics: https://www.youtube.com/channel/UCOJM9xzqDc6-43j2x_vXqCQ
Data Science: https://www.youtube.com/channel/UC3bjbWYK7S_FLW0y0Ux4tyQ
Short Clips: https://www.youtube.com/channel/UCrJE3zmKNdkmPsh_6TIPIIg
Reach out
bioinformaticscoach@gmail.com
bioinformatics for beginners
bioinformatics tutorial
bioinformatics course
Bioinformatics Project
#bioinformaticsforbeginners #bioinformatics #bioinformática #linuxforbeginners #linux
- published: 28 Jul 2023
- views: 761
2:59
Galaxy servers for whole genome sequence analysis | Recommendation
This is to recommend you the "Galaxy" project, a web-based platform for data-intensive biomedical research. Also, it has a training resource to improve your who...
This is to recommend you the "Galaxy" project, a web-based platform for data-intensive biomedical research. Also, it has a training resource to improve your whole genome sequence analysis skills!
Link to the Galaxy server: https://usegalaxy.org/
Link to the Training resource: https://training.galaxyproject.org/
Thumbnail image credit: https://www.pexels.com/de-de/foto/schwarze-bewirtschaftete-brille-vor-laptop-computer-577585/
https://wn.com/Galaxy_Servers_For_Whole_Genome_Sequence_Analysis_|_Recommendation
This is to recommend you the "Galaxy" project, a web-based platform for data-intensive biomedical research. Also, it has a training resource to improve your whole genome sequence analysis skills!
Link to the Galaxy server: https://usegalaxy.org/
Link to the Training resource: https://training.galaxyproject.org/
Thumbnail image credit: https://www.pexels.com/de-de/foto/schwarze-bewirtschaftete-brille-vor-laptop-computer-577585/
- published: 28 Jul 2021
- views: 1525
19:10
Bioinformatics - Setting Up UseGalaxy Locally! (Timestamps)
Hello Everyone!
This week I thought I would talk about UseGalaxy.org which has been a tool I had used in the past. The Galaxy project is a great initiative to ...
Hello Everyone!
This week I thought I would talk about UseGalaxy.org which has been a tool I had used in the past. The Galaxy project is a great initiative to get the complicated informatics tools in a much more easy-to-use format.
I had the wonderful opportunity of talking with one of the authors of the publication and will link it down below. If you use this platform, remember to not only reference the particular tool developers, but also reference the Galaxy Project's manuscript so they get credit for putting this great platform together.
UseGalaxy.org
Galaxy Project Installation Page:
https://galaxyproject.org/admin/get-galaxy/
The Galaxy manuscript:
https://academic.oup.com/nar/article/46/W1/W537/5001157
Timestamps:
00:23 - What is UseGalaxy?
02:17 - Why would you want to run UseGalaxy Locally?
05:07 - Downloading the UseGalaxy GitHub repo
07:17 - Installing dependency `python3-distutils` (not on install guide)
08:26 - Running Galaxy install
11:14 - Setting Administrative users
13:40 - Creating a local user
14:14 - Looking at the admin dashboard
14:40 - Installing tools from the Toolshed
16:52 - Setting number of threads and processes
Please consider contributing to my Patreon where I may do merch, gather ideas for future content, and have further discussions:
https://www.patreon.com/AlexSoupir
https://wn.com/Bioinformatics_Setting_Up_Usegalaxy_Locally_(Timestamps)
Hello Everyone!
This week I thought I would talk about UseGalaxy.org which has been a tool I had used in the past. The Galaxy project is a great initiative to get the complicated informatics tools in a much more easy-to-use format.
I had the wonderful opportunity of talking with one of the authors of the publication and will link it down below. If you use this platform, remember to not only reference the particular tool developers, but also reference the Galaxy Project's manuscript so they get credit for putting this great platform together.
UseGalaxy.org
Galaxy Project Installation Page:
https://galaxyproject.org/admin/get-galaxy/
The Galaxy manuscript:
https://academic.oup.com/nar/article/46/W1/W537/5001157
Timestamps:
00:23 - What is UseGalaxy?
02:17 - Why would you want to run UseGalaxy Locally?
05:07 - Downloading the UseGalaxy GitHub repo
07:17 - Installing dependency `python3-distutils` (not on install guide)
08:26 - Running Galaxy install
11:14 - Setting Administrative users
13:40 - Creating a local user
14:14 - Looking at the admin dashboard
14:40 - Installing tools from the Toolshed
16:52 - Setting number of threads and processes
Please consider contributing to my Patreon where I may do merch, gather ideas for future content, and have further discussions:
https://www.patreon.com/AlexSoupir
- published: 25 Jan 2021
- views: 5541
5:50
galaxy tutorial genome mapping with bwa | paired end reads
bwa index
bwa mem
Subscribe to my channels
Bioinformatics: https://www.youtube.com/channel/UCOJM9xzqDc6-43j2x_vXqCQ
Data Science: https://www.youtube....
bwa index
bwa mem
Subscribe to my channels
Bioinformatics: https://www.youtube.com/channel/UCOJM9xzqDc6-43j2x_vXqCQ
Data Science: https://www.youtube.com/channel/UC3bjbWYK7S_FLW0y0Ux4tyQ
Short Clips: https://www.youtube.com/channel/UCrJE3zmKNdkmPsh_6TIPIIg
Support my work
https://www.buymeacoffee.com/informatician
https://paypal.me/theinformatician
Support me on Patreon
https://www.patreon.com/bigdataanalytics
Book a Session
https://clarity.fm/vincentappiah
Reach out
bioinformaticscoach@gmail.com
https://wn.com/Galaxy_Tutorial_Genome_Mapping_With_Bwa_|_Paired_End_Reads
bwa index
bwa mem
Subscribe to my channels
Bioinformatics: https://www.youtube.com/channel/UCOJM9xzqDc6-43j2x_vXqCQ
Data Science: https://www.youtube.com/channel/UC3bjbWYK7S_FLW0y0Ux4tyQ
Short Clips: https://www.youtube.com/channel/UCrJE3zmKNdkmPsh_6TIPIIg
Support my work
https://www.buymeacoffee.com/informatician
https://paypal.me/theinformatician
Support me on Patreon
https://www.patreon.com/bigdataanalytics
Book a Session
https://clarity.fm/vincentappiah
Reach out
bioinformaticscoach@gmail.com
- published: 17 Nov 2022
- views: 1016
57:54
Webinar: Use Galaxy on the web, the cloud, and your laptop too
Webinar: Use Galaxy on the web, the cloud, and your laptop too: Options for using Galaxy, everywhere and right now
Date: December 9th 2020
Presenters: Enis ...
Webinar: Use Galaxy on the web, the cloud, and your laptop too: Options for using Galaxy, everywhere and right now
Date: December 9th 2020
Presenters: Enis Afgan, Anton Nekrutenko, Michael Schatz
https://galaxyproject.org/events/2020-12-webinar-where/
https://wn.com/Webinar_Use_Galaxy_On_The_Web,_The_Cloud,_And_Your_Laptop_Too
Webinar: Use Galaxy on the web, the cloud, and your laptop too: Options for using Galaxy, everywhere and right now
Date: December 9th 2020
Presenters: Enis Afgan, Anton Nekrutenko, Michael Schatz
https://galaxyproject.org/events/2020-12-webinar-where/
- published: 09 Dec 2020
- views: 295